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GABAA receptor fast desensitization is thought to shape the time course of individual IPSCs. Although GABAA receptors also exhibit slower phases of desensitization, the possible role of slow desensitization in modifying synaptic function is poorly understood. In transiently transfected human embryonic kidney (HEK293T) cells, rat1
3
and
1
3
2L GABAA receptors showed distinct desensitization patterns during long (28 s) concentration jumps using a saturating (1 mM) GABA concentration.
1
3
2L receptors desensitized extensively (~90 %), with four phases (
1 ~20 ms,
2 ~400 ms,
3 ~2 s,
4 ~10 s), while
1
3
receptors desensitized slowly and less extensively (~35 %), with one or two slow phases with time constants similar to
3 and
4 of
1
3
2L receptors. To determine the structural basis of subunit-specific desensitization,
-
2L chimera subunits were expressed with
1 and
3 subunits. Replacing the entire N-terminus of the
2L subunit with
subunit sequence did not alter the number of phases or the extent of desensitization. Although extension of
subunit sequence into transmembrane domain 1 (TM1) abolished the fast and intermediate components of desensitization, the two slow phases still accounted for substantial current loss (~65 %). However, when
subunit sequence was extended through TM2, the extent of desensitization was significantly decreased and indistinguishable from that of
1
3
receptors. The importance of TM2 sequence was confirmed by introducing
2 subunit TM2 residues into the
subunit, which significantly increased the extent of desensitization, without introducing either the fast or intermediate desensitization phases. However, introducing
subunit TM2 sequence into the
2L subunit had minimal effect on the rates or extent of desensitization. The results suggest that distinct
subunit structures are responsible for its unique desensitization properties: lack of fast and intermediate desensitization and small contribution of the slow phases of desensitization. Finally, to investigate the possible role of slow desensitization in synaptic function, we used a pulse train protocol. We observed inhibition of peak current amplitude that depended on the frequency and duration of GABA pulses for receptors exhibiting extensive desensitization, whether fast phases were present or not. The minimally desensitizing
1
3
receptor exhibited negligible inhibition during pulse trains. Because receptors that desensitized without the fast and intermediate phases showed pulse train inhibition, we concluded that receptors can accumulate in slowly equilibrating desensitized states during repetitive receptor activation. These results may indicate a previously unrecognized role for the slow phases of desensitization for synaptic function under conditions of repeated GABAA receptor activation.
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